Data / Repositories / Bioinformatics
Bioinformatics repositories on GitHub: 10 ranked by stars
10 public repositories tagged Bioinformatics are on GitHub, with 14,899 stars between them; 7 had a push in the last 30 days. Most are written in Go (2), TypeScript (2), Shell (1). The most starred: danielecook/Awesome-Bioinformatics (4,310), seandavi/awesome-single-cell (3,871), ai4s-research/awesome-ai-for-science (2,026).
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Every repository, most starred first
| Repository | What it is | Language | Stars | Forks | License | Last push | Read |
|---|---|---|---|---|---|---|---|
| danielecook/Awesome-Bioinformatics | A curated list of awesome Bioinformatics libraries and software. | 4,310 | 732 | Sep 27 | Oct 11 | ||
| seandavi/awesome-single-cell | Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc. | 3,871 | 1,095 | MIT | Oct 5 | Oct 11 | |
| ai4s-research/awesome-ai-for-science | A curated list of awesome AI tools, libraries, papers, datasets, and frameworks that accelerate scientific discovery — from physics and chemistry to biology, materials, and beyond. | 2,026 | 248 | MIT | Oct 10 | Oct 11 | |
| crazyhottommy/getting-started-with-genomics-tools-and-resources | Unix, R and python tools for genomics and data science | Shell | 1,404 | 361 | Aug 25, 2025 | Oct 11 | |
| shenwei356/csvtk | A cross-platform, efficient and practical CSV/TSV toolkit in Golang | Go | 1,173 | 96 | MIT | Sep 24 | Oct 11 |
| shenwei356/rush | A cross-platform command-line tool for executing jobs in parallel | Go | 1,134 | 69 | MIT | Sep 21 | Oct 11 |
| genomoncology/biomcp | BioMCP: Biomedical Model Context Protocol | Rust | 654 | 117 | MIT | Oct 14 | Oct 14 |
| cyanheads/pubmed-mcp-server | Search PubMed/Europe PMC, fetch articles and full text (PMC/EPMC/Unpaywall), citations, MeSH terms via MCP. STDIO or Streamable HTTP. | TypeScript | 160 | 24 | Apache-2.0 | Oct 12 | Oct 14 |
| cyanheads/clinicaltrialsgov-mcp-server | Search ClinicalTrials.gov trials, retrieve study details and results, and match patients to eligible trials via MCP. STDIO or Streamable HTTP. | TypeScript | 99 | 24 | Apache-2.0 | Oct 14 | Oct 14 |
| patsnap/mcp | MCP server for 200M+ patents, scientific literature, chemistry and pharma records. Search prior art and R&D intelligence powered by PatSnap's proprietary databases via Claude… | 68 | 4 | Apache-2.0 | Aug 20 | Oct 14 |
Related topics
- MCP 4
- MCP server 4
- Awesome list 3
- Model Context Protocol 3
- Cross platform 2
- Go 2
- AI agents 2
- Cyanheads 2
- TypeScript 2
- Data visualization 1
- Python 1
- Data science 1
Read from GitHub by SpecStream between October 11, 2026 and October 14, 2026; each row shows the day its repository was read. Stars and pushes change every day, and the GitHub page is the current one. Forks and archived repositories are left out.