| Mybridge | 501(c)(3) | 2010 | $4.1 million | $12.5 million | 2025-12 |
| Back To the Bible | 501(c)(3) | 1943 | $3.7 million | $5.3 million | 2025-06 |
| Nebraska United Methodist Foundation | 501(c)(3) | 2013 | $3 million | $66.3 million | 2025-12 |
| Hope of the Poor Inc | 501(c)(3) | 2018 | $1.3 million | $1.3 million | 2025-12 |
| Harbor Ministries Inc | 501(c)(3) | 2007 | $1.2 million | $3 million | 2024-12 |
| Global Assist | 501(c)(3) | 2009 | $937,159 | $359,347 | 2024-12 |
| Back To the Bible Foundation | 501(c)(3) | 1984 | $917,778 | $2.9 million | 2025-06 |
| Saint John Bosco Camps | 501(c)(3) | 2020 | $800,634 | $635,311 | 2024-12 |
| Emmaus Institute for Biblical Studies | 501(c)(3) | 2019 | $455,400 | $70,587 | 2025-12 |
| Institute for Christianity and Common Life | 501(c)(3) | 2024 | $358,700 | $32,933 | 2025-12 |
| Knights of the Holy Eucharist Inc | 501(c)(3) | 2013 | $287,819 | $251,216 | 2025-12 |
| Lancaster County Interfaith Justice Organization | 501(c)(3) | 2022 | $234,408 | $44,567 | 2024-12 |
| Linh Quang Buddhist Center Inc | 501(c)(3) | 2003 | $223,101 | $2.9 million | 2024-12 |
| St Paul Methodist Church Memorial Fund Inc | 501(c)(3) | 1963 | $204,454 | $3 million | 2025-12 |
| Gracepoint Institute for Relational Health | 501(c)(3) | 2014 | $201,341 | $11,079 | 2025-02 |
| Haiti Lutheran Mission Society Inc | 501(c)(3) | 1994 | $186,484 | $119,941 | 2025-12 |
| More Mercy | 501(c)(3) | 2023 | $173,874 | $23,325 | 2025-12 |
| Midwest Dharma Wheel Contemplative & Healing Arts Inc | 501(c)(3) | 2019 | $170,660 | $463,772 | 2025-12 |
| Messiah Lutheran Foundation Inc | 501(c)(3) | 2023 | $168,353 | $792,205 | 2025-12 |
| Missionary Way Inc | 501(c)(3) | 2022 | $144,045 | $25,129 | 2024-12 |
| 1 Page A Day Ministries | 501(c)(3) | 2023 | $124,567 | $55,867 | 2024-12 |
| Missionaries of the Holy Spirit in the Family | 501(c)(3) | 2018 | $124,182 | $64,548 | 2025-12 |
| Living Word Ministries International | 501(c)(3) | 2021 | $105,389 | $93,358 | 2024-12 |
| Convincing Proof Ministries | 501(c)(3) | 2022 | $98,172 | $8,381 | 2025-12 |
| Sync With God | 501(c)(3) | 1995 | $78,462 | $12,568 | 2025-09 |
| Trinity Fitness Ministries Inc | 501(c)(3) | 2015 | $73,336 | $50,646 | 2025-12 |
| First Christian Church Foundation Inc | 501(c)(3) | 2016 | $67,653 | $1.1 million | 2024-12 |
| Christ Crucified | 501(c)(3) | 2024 | $65,602 | $40,007 | 2025-12 |
| Buddhist Community of Lincoln | 501(c)(3) | 2012 | $57,707 | $489,327 | 2025-12 |
| Duo Ministries | 501(c)(3) | 2023 | $54,335 | $45,882 | 2025-12 |
| Christus Foundation | 501(c)(3) | 2002 | $45,284 | $54,807 | 2025-12 |
| Southeast Nebraska Campus Life Foundation Inc | 501(c)(3) | 2003 | $35,972 | $362,987 | 2025-06 |
| Good Shepherd Community Radio | 501(c)(3) | 2014 | $10,446 | $115,192 | 2025-12 |
| Campus Athletes for Christ | 501(c)(3) | 2003 | $10,260 | $3,096 | 2025-12 |
| Norall Scholarship Trust | 501(c)(3) | 1997 | $6,330 | $105,541 | 2025-12 |
| Association for Seventh-Day Adventist Historians | 501(c)(3) | 2014 | $35 | $3,081 | 2023-12 |
| Abiding Grace Community Church | 501(c)(3) | 2006 | | | |
| African Clergy Caucus in the Great Plains Annual Conference | 501(c)(3) | 2026 | | | |
| Ambassador in Christ Ministries Inc | 501(c)(3) | 1984 | $0 | $0 | 2025-12 |
| Apprentice Ministries Inc | 501(c)(3) | 2014 | $0 | $0 | 2024-12 |
| Aquarian Tabernacle Church Inc | 501(c)(3) | 1991 | | | |
| Association of Retired Ministers &SPOUSES Inc | 501(c)(3) | 2007 | | | |
| Before Gethsemane Initiative | 501(c)(3) | 2022 | $0 | $0 | 2025-12 |
| Bethel Cornerstone | 501(c)(3) | 2005 | $0 | $0 | 2025-12 |
| Blue Heron Tiospaye | 501(c)(3) | 2018 | $0 | $0 | 2025-12 |
| Calvary Community Church | 501(c)(3) | 2021 | | | |
| Calvary Outreach Fellowship | 501(c)(3) | 2003 | | $1 | 2001-12 |
| Capitol City Christian Church | 501(c)(3) | 2006 | | | |
| Catholic Business Women International | 501(c)(3) | 2014 | $0 | $0 | 2025-09 |
| Chinese Christian Church of Lincoln | 501(c)(3) | 2007 | | | |
| Christ Temple Mission | 501(c)(3) | 2003 | | | |
| Church of Christ Restored | 501(c)(3) | 2005 | | | |
| Clear Mission Bible Fellowship | 501(c)(3) | 2026 | | | |
| Contemplative Community Creators Network | 501(c)(3) | 2024 | $0 | $0 | 2025-12 |
| Cornerstone Baptist Church | 501(c)(3) | 1996 | | | |
| Crusaders Gospel Group | 501(c)(3) | 2001 | $0 | $0 | 2023-12 |
| Disciples of Hope International Ministry | 501(c)(3) | 2026 | | | |
| Disciples of Inner Truth and Light Inc | 501(c)(3) | 2012 | $0 | $0 | 2026-03 |
| F Street Neighborhood Church | 501(c)(3) | 2020 | | | |
| Faith Apostolic Holiness Church | 501(c)(3) | 1998 | | | |
| Faith Bible Church of Lincoln Nebraska | 501(c)(3) | 1995 | | | |
| Faith Coalition of Lancaster County | 501(c)(3) | 2020 | $0 | $0 | 2026-06 |
| Faith Lutheran Foundation Inc | 501(c)(3) | 1976 | | | |
| First Baptist Church of Lincoln Foundation Inc | 501(c)(3) | 1974 | | | |
| First Evangelical Free Church of Lincoln Nebraska Foundation | 501(c)(3) | 2003 | | | |
| First Slavic Baptist Church | 501(c)(3) | 1974 | | | |
| Fresh Air Church Inc | 501(c)(3) | 2021 | | | |
| Gaat South Sudan | 501(c)(3) | 2016 | $0 | $0 | 2025-12 |
| Holiness Bibleway Apostolic Church | 501(c)(3) | 2025 | | | |
| House of Prayer Christian Church | 501(c)(3) | 2001 | | | |
| Illyrian Revival Inc | 501(c)(3) | 2025 | $0 | $0 | 2025-12 |
| Immanuel Temple Apostolic Holiness Church | 501(c)(3) | 2004 | | | |
| In Prayer International Inc | 501(c)(3) | 2024 | $0 | $0 | 2025-12 |
| Interchurch Ministries of Nebraska | 501(c)(3) | 1965 | | | |
| Intertribal Spiritual Lodges | 501(c)(3) | 2019 | $0 | $0 | 2025-12 |
| Islamic Foundation of Lincoln | 501(c)(3) | 2004 | | | |
| Lighting the Way Pastoral Care | 501(c)(3) | 2021 | $0 | $0 | 2025-12 |
| Lincoln Baptist Church | 501(c)(3) | 2003 | | | |
| Lincoln East Band Boosters | 501(c)(3) | 1996 | $0 | $0 | 2026-06 |
| Living Hope Transformation Center Inc | 501(c)(3) | 2023 | $0 | $0 | 2025-12 |
| MTR Inc | 501(c)(3) | 2021 | $0 | $0 | 2025-12 |
| Mercy City Church Inc | 501(c)(3) | 2014 | | | |
| Mercy On Time International Ministry | 501(c)(3) | 2023 | $0 | $0 | 2024-12 |
| Moments With Yahweh | 501(c)(3) | 2019 | $0 | $1 | 2025-12 |
| Mount Olive Lutheran Church | 501(c)(3) | 1966 | | | |
| Nebras | 501(c)(3) | 2025 | | | |
| Nebraska Christian Leaders Forum | 501(c)(3) | 2024 | $0 | $0 | 2024-12 |
| Nebraska Families for Homeschooling | 501(c)(3) | 2026 | $0 | $0 | 2025-12 |
| Nebraska Leadership Foundation | 501(c)(3) | 2001 | $0 | $0 | 2025-12 |
| Neighbors United | 501(c)(3) | 2012 | $0 | $0 | 2025-12 |
| New Hope United Church of Christ | 501(c)(3) | 1996 | | | |
| New Life Cathedral of Praise Inc | 501(c)(3) | 2009 | | | |
| No Really Ministries Inc | 501(c)(3) | 2024 | $0 | $0 | 2024-12 |
| One Heart One Mind Inc | 501(c)(3) | 2024 | $0 | $0 | 2025-12 |
| Praise Chapel Lincoln Nebraska | 501(c)(3) | 1995 | | | |
| Praise Temple Church of Living God | 501(c)(3) | 2022 | $0 | $0 | 2025-12 |
| Redeeming Grace Baptist Church of Lincoln Nebraska | 501(c)(3) | 2024 | | | |
| Rivers of Holy Spirit Church | 501(c)(3) | 2009 | | | |
| Sabah Inc | 501(c)(3) | 2016 | $0 | $0 | 2025-12 |
| Sacred Winds Community Church | 501(c)(3) | 2003 | | | |
| Salt Light Catholic Young Adult Community | 501(c)(3) | 2025 | $0 | $0 | 2026-06 |
| Scripture and Science Inc | 501(c)(3) | 2020 | $0 | $0 | 2025-01 |
| Se Nebraska Kez | 501(c)(3) | 2017 | $0 | $0 | 2024-12 |
| Sola Scriptura | 501(c)(3) | 2005 | | | |
| Spirit of Christ Gospel Church Inc | 501(c)(3) | 2019 | | | |
| St Philomena & St Rita Oblation Fund | 501(c)(3) | 2018 | $0 | $0 | 2025-12 |
| Stage Inc | 501(c)(3) | 2019 | $0 | $0 | 2025-12 |
| Sunday School Center | 501(c)(3) | 2019 | $0 | $0 | 2025-12 |
| Tackle Box Studios Inc | 501(c)(3) | 2023 | $0 | $0 | 2025-12 |
| The Catholic Foundation of Southern Nebraska | 501(c)(3) | 1946 | | | |
| The Tent Corp | 501(c)(3) | 2025 | | | |
| To the Brim Ministries Inc | 501(c)(3) | 2020 | $0 | $0 | 2025-12 |
| Transfiguration of Our Savior Orthodox Church | 501(c)(3) | 2002 | | | |
| Transformative Life Inc | 501(c)(3) | 2017 | | | |
| Tri-Angel Adventist Media Inc | 501(c)(3) | 2005 | $0 | $0 | 2025-12 |
| True Hope Apostolic Temple | 501(c)(3) | 2025 | | | |
| Unitarian Church of Lincoln Nebraska | 501(c)(3) | 2023 | | | |
| United Latvian Ev-Luth Church of Lincoln | 501(c)(3) | 2004 | | | |
| Upper Room Ministries | 501(c)(3) | 2002 | | | |
| Way of God Thru Jesus Christ Church Ministries Inc | 501(c)(3) | 2017 | | | |
| Your Word My Light Ministries | 501(c)(3) | 2026 | | | |