| Auditorium de Amor Kennedy Inc | San Juan | 501(c)(3) | 2022 | $1.9 million | $1.1 million | 2024-12 |
| Ministerio Buen Samaritano Marc Marcos A Rivera Cordova Inc | Manati | 501(c)(3) | 2017 | $1.6 million | $2.4 million | 2024-12 |
| Carib Christian Ministries Inc | Aguadilla | 501(c)(3) | 2022 | $1.4 million | $630,776 | 2024-12 |
| Radio Redentor | San Juan | 501(c)(3) | 2019 | $1.3 million | $2.6 million | 2024-12 |
| Calvary Evangelistic Mission Inc | San Juan | 501(c)(3) | 1965 | $606,462 | $8 million | 2025-12 |
| Abba Pater Church Corporation | Bajadero | 501(c)(3) | 2022 | $547,476 | $559,628 | 2022-12 |
| Mision Nuestra Senora de Pozo Inc | Bayamon | 501(c)(3) | 2014 | $239,436 | $1.6 million | 2025-06 |
| Obra Misionera de La Restitucion Inc | Bayamon | 501(c)(3) | 2014 | $197,532 | $1.2 million | 2025-06 |
| Asspen International Inc | San Juan | 501(c)(3) | 2022 | $186,103 | $301,441 | 2024-12 |
| Universidad Teologica Echam | Rio Grande | 501(c)(3) | 2025 | $161,950 | $252,975 | 2025-12 |
| Fundacion Fernando Martinez Caula Inc | Caguas | 501(c)(3) | 2021 | $146,171 | $964,075 | 2025-10 |
| Henosis Ministries Inc | Trujillo Alto | 501(c)(3) | 2024 | $109,322 | $82,648 | 2025-12 |
| Su Mesa Cafe Inc | Coto Laurel | 501(c)(3) | 2024 | $107,697 | $24,804 | 2023-12 |
| Cooperacion Misionera Iberoamericana Inc | San Juan | 501(c)(3) | 2014 | $67,698 | $288,453 | 2025-12 |
| Jucum Urbano Corporation | Trujillo Alto | 501(c)(3) | 2015 | $66,463 | $20,708 | 2025-12 |
| European Christian Leadership Academy Inc | Toa Baja | 501(c)(3) | 2007 | $57,454 | $1 | 2025-12 |
| Camp Victoria Inc | Vieques | 501(c)(3) | 2024 | $45,806 | $1 | 2026-04 |
| Iglesia Gnostica Cristiana Universal Samael Aun Weor de Puert | San German | 501(c)(3) | 2016 | $2,873 | $218,588 | 2024-12 |
| Cuida Tu Esencia Inc | Trujillo Alto | 501(c)(3) | 2023 | $2,305 | $7,123 | 2024-12 |
| Agencia Misionera Aliento A Las Nac Iones Aman Inc | Humacao | 501(c)(3) | 2026 | | | |
| Alfaruq Mousque Inc | Vega Alta | 501(c)(3) | 2007 | | | |
| Amor En Movimiento Para La Restaura Cion | Fajardo | 501(c)(3) | 2026 | | | |
| Arise Church Inc | San Juan | 501(c)(3) | 2020 | | | |
| Ark Hall Ministries | Lajas | 501(c)(3) | 2009 | | | |
| Aryeh Yehudah Ministry | Santa Isabel | 501(c)(3) | 2026 | | | |
| Asociacion Misionera de Iglesias Pentecostales | San Juan | 501(c)(3) | 2014 | | | |
| Asociacion Puertorriquenos En Marcha - PR | San Juan | 501(c)(3) | 2025 | | | |
| B B Bhagavat Institute for Bhakthi Yoga Inc | San Juan | 501(c)(3) | 2009 | | | |
| Bajo Los Ojos Del Altisimo | Gurabo | 501(c)(3) | 2026 | | | |
| Beyond Church Corp | Caguas | 501(c)(3) | 2025 | | | |
| Caballeros Catolicos de Manati Inc | Manati | 501(c)(3) | 2026 | | | |
| Calvary Chapel of Puerto Rico Inc | Guaynabo | 501(c)(3) | 2000 | | | |
| Campus Crusade for Christ Inc | Mayaguez | 501(c)(3) | 2002 | | | |
| Casa Amor Fe Y Esperanza | Bayamon | 501(c)(3) | 2022 | $0 | $0 | 2025-12 |
| Casa Generacion Escogida Inc | Trujillo Alto | 501(c)(3) | 2021 | | | |
| Casa de Adoracion Llama de Fuego | Gurabo | 501(c)(3) | 2019 | | | |
| Casa de Refugio En Medio de La Tempestad | San Lorenzo | 501(c)(3) | 2024 | | | |
| Casa de Restauracion Familiar-La Iglesia de La Ola | Puerto Real | 501(c)(3) | 2026 | | | |
| Casa de Salvacion Inc | San Juan | 501(c)(3) | 2002 | | | |
| Cca Cineart Creative Academy Inc | Mayaguez | 501(c)(3) | 2025 | | | |
| Centro Cristiano Vida Abundante Inc | Toa Baja | 501(c)(3) | 2025 | | | |
| Centro Cristiano de Restauracion de Cabo Rojo Inc | Cabo Rojo | 501(c)(3) | 2002 | | | |
| Centro Familiar Cristiano S G Inc | Sabana Grande | 501(c)(3) | 2023 | | | |
| Centro Islamico de Arecibo Inc | Hatillo | 501(c)(3) | 2016 | | | |
| Centro Y Escuela de Consejeria Y Terapia Familiar Cristiano Inc | Toa Baja | 501(c)(3) | 2024 | $0 | $0 | 2025-12 |
| Centro Zen of Puerto Rico | San Juan | 501(c)(3) | 2026 | | | |
| Centro de Embajadores En Cabo Rojo Inc | Cabo Rojo | 501(c)(3) | 2011 | | | |
| Centro de Restauracion de La Familia Inc | San Juan | 501(c)(3) | 2022 | | $1 | 2024-12 |
| Chabad Lubavitch of Puerto Rico Inc | Carolina | 501(c)(3) | 2000 | | | |
| Ciudad de Restauracion Shalom Inc | Carolina | 501(c)(3) | 2003 | | | |
| Cofradia Del Santisimo Cristo de Toda La Nacion P Y Del A de La | San Juan | 501(c)(3) | 2022 | $0 | $0 | 2025-12 |
| Colegio Santiago Apostol | Fajardo | 501(c)(3) | 2014 | | | |
| Comunidad Cristiana Verdadera Identidad Inc | Adjuntas | 501(c)(3) | 2025 | | | |
| Comunidad de Fe Arbol de Vida | San Juan | 501(c)(3) | 2024 | | | |
| Conexion de Vida Internacional Inc | Rio Grande | 501(c)(3) | 2021 | $0 | $0 | 2024-12 |
| Confia Y Cree Ministry | Bayamon | 501(c)(3) | 2026 | | | |
| Congregacion Cristiana de Los Testigos de Jehova de Puerto Rico | Guaynabo | 501(c)(3) | 2005 | | | 2011-08 |
| Cruzada Evangelica Misionera | San Juan | 501(c)(3) | 2026 | | | |
| Deaf Christian Evangelistic Assoc International Inc | Hato Rey | 501(c)(3) | 1995 | $0 | $0 | 2025-12 |
| Descubriendo El Amor de Dios Inc | Guaynabo | 501(c)(3) | 2019 | | | |
| Discover Church Puerto Rico | Vega Baja | 501(c)(3) | 2025 | $0 | $0 | 2025-01 |
| Distrito de Puerto Rico de La Alianza Cristiana Y Misionera Inc | Sabana Hoyos | 501(c)(3) | 2026 | | | |
| Educa Hoy Inc | Juncos | 501(c)(3) | 2025 | | | |
| El Centro Islamico En Puerto Rico | San Juan | 501(c)(3) | 2001 | | | |
| Elim Casa de Oasis | Canovanas | 501(c)(3) | 2024 | | | |
| Elohim-Casa de Dios Todopoderoso Internacional Inc | Florida | 501(c)(3) | 2024 | | | |
| Emanuel Christian Church | Jayuya | 501(c)(3) | 2024 | | | |
| Encaminando En Fe Vida Y Empredimie Nto Inc | Saint Just | 501(c)(3) | 2026 | | | |
| Endos Network | San Juan | 501(c)(3) | 2023 | | | |
| Euro1040 Inc | Vega Baja | 501(c)(3) | 2023 | | $8,862 | 2024-12 |
| Fe Que Transforma Inc | Vieques | 501(c)(3) | 2026 | | | |
| Fideicomiso Jose Ramon Alvarez- Rodriguez & Gloria Figueras-Suro | San Juan | 501(c)(3) | 2014 | | $15.4 million | 2025-12 |
| Flame of Fire Ministries | Arecibo | 501(c)(3) | 2022 | | | |
| Fondo Permanente Episcopal | Trujillo Alto | 501(c)(3) | 2008 | | | |
| For Such A Time As This Inc | Aguada | 501(c)(3) | 2018 | $0 | $0 | 2025-12 |
| Fundacion Causa En Accion | Humacao | 501(c)(3) | 2015 | $0 | $0 | 2025-12 |
| Fundacion Gabriel Rivat Inc | Guaynabo | 501(c)(3) | 2019 | | | |
| Fundacion La Motita Blanca Inc | Manati | 501(c)(3) | 2021 | $0 | $0 | 2025-12 |
| Fundacion Protectora de La Catedral Metropolitana de San Juan | San Juan | 501(c)(3) | 2020 | | $111,162 | 2024-12 |
| Fundacion Selah Inc | Hatillo | 501(c)(3) | 2026 | | | |
| Fundacion Ve Y Ama Inc | Isabela | 501(c)(3) | 2026 | | | |
| Gier International Corporation | Guaynabo | 501(c)(3) | 2023 | | | |
| Global Christian Outreach Corporation | Humacao | 501(c)(3) | 2017 | | $453,623 | 2025-12 |
| Hasta Que El Venga Ministry Inc | Vega Baja | 501(c)(3) | 2025 | | | |
| Hermanas de Nazaret | Salinas | 501(c)(3) | 1946 | | | |
| High Achievement Christian School Inc | Bayamon | 501(c)(3) | 2022 | | | |
| Hope and Faith Broadcast Ministry I NC | Gurabo | 501(c)(3) | 2026 | $0 | $0 | 2025-12 |
| Hunger for God Movement Inc | Patillas | 501(c)(3) | 2025 | | | |
| Iglesia Adulam Casa de Refugio Y Avivamiento Inc | Arroyo | 501(c)(3) | 2025 | | | |
| Iglesia Bautista Bethel Del Sur Inc | Ponce | 501(c)(3) | 2024 | | | |
| Iglesia Bautista Bethel de P R | Canovanas | 501(c)(3) | 1999 | | | |
| Iglesia Bautista de Las Cruces Inc | Caguas | 501(c)(3) | 2026 | | | |
| Iglesia Biblica Gracia Verdadera Inc | Caguas | 501(c)(3) | 2024 | | | |
| Iglesia Casa Del Padre Inc Urb Colinas de Fairview | Trujillo Alto | 501(c)(3) | 2022 | | | |
| Iglesia Casa de Adoracion Y Puerta Del Cielo Inc | Toa Alta | 501(c)(3) | 2025 | | | |
| Iglesia Centro de Servicios Cristianos Casa de Amor Inc | Ponce | 501(c)(3) | 2015 | | | |
| Iglesia Ciudad Fortificada Tsebaoth Inc | Bayamon | 501(c)(3) | 2025 | | | |
| Iglesia Cristiana Casa de Oracion Y Adoracion | San German | 501(c)(3) | 2003 | | | |
| Iglesia Cristiana Ciudad Del Gran Rey En Yauco Inc | Juana Diaz | 501(c)(3) | 2026 | | | |
| Iglesia Cristiana Discipulos de Cristo | Bayamon | 501(c)(3) | 2025 | | | |
| Iglesia Cristiana Discipulos de Cristo En Rep Metropolitano | San Juan | 501(c)(3) | 2004 | | | |
| Iglesia Cristiana Discipulos de Cristo En Vega Alta I | Vega Alta | 501(c)(3) | 2002 | | | |
| Iglesia Cristiana El Shaddai Inc | Sabana Grande | 501(c)(3) | 2009 | | | |
| Iglesia Cristiana Emmanuel Inc | Caguas | 501(c)(3) | 2026 | | | |
| Iglesia Cristiana Genesaret Inc | Guaynabo | 501(c)(3) | 2026 | | | |
| Iglesia Cristiana Internacional Santuario Arbol de Vida Inc | Caguas | 501(c)(3) | 2019 | | | |
| Iglesia Cristiana La Sal de La Tier Ra Inc | Salinas | 501(c)(3) | 2026 | | | |
| Iglesia Cristiana Mensajeros Del Senor Inc | San Juan | 501(c)(3) | 2023 | | | |
| Iglesia Cristiana Misionera A Los Pies de Cristo | Quebradillas | 501(c)(3) | 2020 | | | |
| Iglesia Cristiana Pacto de Amor | Trujillo Alto | 501(c)(3) | 2022 | | | |
| Iglesia Cristiana Palabra de Agua Viva Internacional Incorporado | Caguas | 501(c)(3) | 2019 | | | |
| Iglesia Cristiana Rendidos A Los Pies Del Maestro | Patillas | 501(c)(3) | 2020 | | | |
| Iglesia Cristiana Restaurando Al Caido Inc | Dorado | 501(c)(3) | 2011 | | | |
| Iglesia Cristiana Torre Fuerte | Juncos | 501(c)(3) | 2002 | | | |
| Iglesia Cristiana Vida En Jesus | Cayey | 501(c)(3) | 2026 | | | |
| Iglesia Cristo La Verdad | Caguas | 501(c)(3) | 2023 | $0 | $0 | 2024-12 |
| Iglesia Defensores de La Fe de Barrazas Inc | Carolina | 501(c)(3) | 2025 | $0 | $0 | 2025-12 |
| Iglesia Desarrolladora Cristocentrico HNC Fundacion | San Juan | 501(c)(3) | 1999 | | | |
| Iglesia Fuente de Agua Viva Orlando FL Inc | Carolina | 501(c)(3) | 2016 | | | |
| Iglesia Fuente de Luz Inc | Mayaguez | 501(c)(3) | 2022 | | | |
| Iglesia Fuente de Salvacion Misionera Inc M I Lijas Las PDRS | Las Piedras | 501(c)(3) | 2015 | | | |
| Iglesia Jesucristo Es El Senor En Aguas Buenas | Aguas Buenas | 501(c)(3) | 2006 | | | |
| Iglesia La Travesia | San Juan | 501(c)(3) | 2019 | | | |
| Iglesia Luterana Misionera Inc | San Juan | 501(c)(3) | 2024 | | | |
| Iglesia Misionera Ebenezer Defensores de La E Cristiona Inc | Orocovis | 501(c)(3) | 2014 | | | |
| Iglesia Pabellon de La Victoria En Ponce | Ponce | 501(c)(3) | 1969 | | | |
| Iglesia Pentecostal Cristo Cuenta Contigo Inc | Humacao | 501(c)(3) | 2024 | $0 | $0 | 2025-12 |
| Iglesia Pentecostal Uncion de Cristo Inc | Hatillo | 501(c)(3) | 2021 | $0 | $0 | 2025-12 |
| Iglesia Pentecostal Y Misionera Internacional Inc | Carolina | 501(c)(3) | 2021 | | | |
| Iglesia Presbiteriana Comunion Inc | Caguas | 501(c)(3) | 2022 | | | |
| Iglesia Restauracion Puerto Rico Inc | Maunabo | 501(c)(3) | 2022 | | | |
| Iglesia Roca de Refugio Defensores de La Fe Inc | Toa Alta | 501(c)(3) | 2002 | | | |
| Iglesia Tabernaculo de Restauracion Casa de Paz | Aguada | 501(c)(3) | 2024 | | | |
| Iglesia Universal Del Reino de Dios Inc | San Juan | 501(c)(3) | 2017 | | | |
| Iglesia de Dios Inc Bo Pasto Seco | Las Piedras | 501(c)(3) | 2019 | | | |
| Iglesia de Dios Pentecostal Mi Sede Internacional Corp | San Juan | 501(c)(3) | 2017 | | | |
| Iglesia de Pentecostal de Renovacion Christiana Inc | Lares | 501(c)(3) | 1999 | | | |
| Iglesia de Restauracion Casa de Adoracion Y de Pan Inc | Ponce | 501(c)(3) | 2003 | | | |
| Instituto San Jose Corp | Bayamon | 501(c)(3) | 2025 | $0 | $0 | 2025-12 |
| Instituto de Formacion Ignaciana Inc | San Juan | 501(c)(3) | 2026 | | | |
| International Society for Krishna Consciousness de Puerto Rico Inc | Gurabo | 501(c)(3) | 2019 | | | |
| Iskcon Gurabo | Gurabo | 501(c)(3) | 2014 | | | |
| Islanders Christian Church Inc | Canovanas | 501(c)(3) | 2021 | | | |
| Jesus Christ Is the Word of God Ministry Inc | Dorado | 501(c)(3) | 2019 | $0 | $0 | 2025-12 |
| Joey Soto Ministry Corporation | Isabela | 501(c)(3) | 2024 | $0 | $0 | 2025-12 |
| La Iglesia En San Juan Inc | San Juan | 501(c)(3) | 2006 | | | |
| Luquillo Bible Church | Liquillo | 501(c)(3) | 1964 | | | |
| Ministereo Ayudando A Los Olvidados Inc | Carolina | 501(c)(3) | 2015 | | | |
| Ministerio Capellania Cedro Del Libano | Levittown | 501(c)(3) | 2023 | $0 | $0 | 2025-12 |
| Ministerio Cinendose La Toalla Inc | San Juan | 501(c)(3) | 2025 | $0 | $0 | 2025-12 |
| Ministerio Cristiano Salem | San Juan | 501(c)(3) | 2024 | $0 | $0 | 2025-01 |
| Ministerio Evangelismo Y Restauracion Ciudad Del Gran Rey I | Juana Diaz | 501(c)(3) | 2003 | | | |
| Ministerio Evangelistico Rescatando Las Almas Para El Reino de Cristo | Camuy | 501(c)(3) | 2024 | $0 | $0 | 2024-12 |
| Ministerio Justicia Pazy Gozo Inc | Yauco | 501(c)(3) | 2019 | | | |
| Ministerio Social Trayendo Esperanza | Juncos | 501(c)(3) | 2023 | $0 | $0 | 2025-12 |
| Ministerio Somos Sal Inc | Isabela | 501(c)(3) | 2025 | $0 | $0 | 2025-12 |
| Ministerio Turn Point Inc | Anasco | 501(c)(3) | 2025 | | | |
| Ministerio Ve Y Ama Inc | Isabela | 501(c)(3) | 2026 | | | |
| Ministerio Vida Abuntante-Abundant Life Ministry-Inc | Mayaguez | 501(c)(3) | 2004 | $0 | $0 | 2025-12 |
| Ministerios de Fe Y Esperanza Inc | Saint Just | 501(c)(3) | 2022 | $0 | $0 | 2025-12 |
| Ministrando Sobre Las Naciones Inc | Fajardo | 501(c)(3) | 2022 | $0 | $1 | 2021-12 |
| Mision Aprend Inc | Luquillo | 501(c)(3) | 2024 | $0 | $0 | 2025-12 |
| Mision Evangelica Cristiana de Arecibo Inc | Arecibo | 501(c)(3) | 2008 | | | |
| Mision Internacional Cristiana Inc | Canovanas | 501(c)(3) | 2025 | | | |
| Mision Ortodoxa San Juan Climaco in C | San German | 501(c)(3) | 2026 | | | |
| Misioneros Y Misioneras Bel Amor Shcramentado | San Juan | 501(c)(3) | 2021 | | | |
| Misiones Idpmi Sede Internacional Corp | San Juan | 501(c)(3) | 2017 | | | |
| Monasterio Santa Clara de Puerto Rico Hernanas C Arisas | Aguas Buenas | 501(c)(3) | 2014 | | | |
| Monjas Dela Orden Dela Bienaventura Da Virgen Maria DL Mte Carmelo Inc | San Juan | 501(c)(3) | 2024 | | | |
| Movement Corp | Mayaguez | 501(c)(3) | 2024 | | | |
| Movimiento Apostolico de Impacto A Las Naciones | Bayamon | 501(c)(3) | 2024 | | | |
| Movimiento Pentecostal La Luz Del Mundo Inc | Fajardo | 501(c)(3) | 2020 | | | |
| Movimiento Pentecostal Misionero Iglesia Que Ora Y Adora Inc | Carolina | 501(c)(3) | 2025 | | | |
| Movimiento de Fe Un Oasis En El Des Ierto Inc | Fajardo | 501(c)(3) | 2026 | | | |
| Movimiento de Iglesia Pentecostal La Conquista Final Internacional | Arecibo | 501(c)(3) | 2023 | | | |
| Navigators of Puerto Rico Inc | Vega Baja | 501(c)(3) | 2018 | | | |
| Navigators of the Caribbean Inc | Vega Baja | 501(c)(3) | 2018 | | | |
| New Family Church Inc | Anasco | 501(c)(3) | 2025 | | | |
| Northwest Bible Church Inc | Aguadilla | 501(c)(3) | 2024 | | | |
| Palmas Community Church | Humacao | 501(c)(3) | 2015 | | | |
| Parroquia Inmaculado Corazon de Maria | Caguas | 501(c)(3) | 2026 | | | |
| Polifonias Teologicas Inc | Dorado | 501(c)(3) | 2025 | $0 | $0 | 2025-12 |
| Politecnico Teresiano Hermanas Carmelitas Teresas de San Jose Inc | Canovanas | 501(c)(3) | 2016 | | | |
| Primera Iglesia Bautista Playa Ponce | Ponce | 501(c)(3) | 2002 | | | |
| Probounce Foundation | Carolina | 501(c)(3) | 2026 | | | |
| Pueblo de Dios Jesus Senor Y Rey | Caguas | 501(c)(3) | 1997 | | | |
| Puerto Rico Zen Center Corporation | San Juan | 501(c)(3) | 2026 | | | |
| Radio Maria Puerto Rico | Cayey | 501(c)(3) | 2024 | | | |
| Rame Ministries Inc | Bayamon | 501(c)(3) | 2016 | $0 | $0 | 2025-09 |
| Red de Iglesias Cristiana Nueva Uncion | Aguadilla | 501(c)(3) | 2018 | | | |
| Restaurando Al Amor Fe Esperanza Con Jesus Y Maria Inc | San Juan | 501(c)(3) | 2023 | $0 | $0 | 2025-12 |
| Righ Hand Council Corp | Carolina | 501(c)(3) | 2024 | | | |
| Rise Again Foundation | Guaynabo | 501(c)(3) | 2025 | | | |
| Sca Corporation | Canovanas | 501(c)(3) | 2025 | | | |
| Second Union Church of San Juan | Guaynabo | 501(c)(3) | 2010 | | | |
| Seminario Teologico de Puerto Rico Inc | San Juan | 501(c)(3) | 2025 | | | |
| Sociedad Para La Teologia Pentecostal Caribena | Ponce | 501(c)(3) | 2026 | | | |
| Stoa Inc | Quebradillas | 501(c)(3) | 2026 | | | |
| Summit Church Puerto Rico Inc | Humacao | 501(c)(3) | 2025 | | | |
| Table Church Puerto Rico Inc | San Antonio | 501(c)(3) | 2026 | | | |
| Templo La Caridad Del Cobre Inc | Mayaguez | 501(c)(3) | 2021 | | | |
| The Truth Table Christian Church | Bayamon | 501(c)(3) | 2026 | | | |
| Trinity Church Inc | Bayam N | 501(c)(3) | 2018 | | | |
| Tu Crece Inc | Trujillo Alto | 501(c)(3) | 2023 | | | |
| Uno Church Inc | Anasco | 501(c)(3) | 2026 | | | |
| Viento Contrario Inc | Vega Alta | 501(c)(3) | 2025 | $0 | $0 | 2025-12 |
| Vine and Branches Christian Ministries Inc | Aguadilla | 501(c)(3) | 2021 | $0 | $0 | 2024-12 |
| Walking With Jesus | Isabela | 501(c)(3) | 2026 | | | |
| Ywj Enterprises | Juana Diaz | 501(c)(3) | 2015 | | | |