| Maa Shakti Jagran and Ramayan Sanstha Inc | 501(c)(3) | 2003 | $1.2 million | $1.8 million | 2024-12 |
| City Ministry Network | 501(c)(3) | 2005 | $1.2 million | $541,647 | 2025-12 |
| Mary Mother of God Mission Society | 501(c)(3) | 1998 | $802,283 | $1.4 million | 2024-12 |
| Greater Modesto Interfaith Hospitality Network Inc | 501(c)(3) | 2003 | $665,506 | $932,689 | 2025-06 |
| Unidos Por Cristo Y Maria | 501(c)(3) | 2018 | $393,804 | $2 million | 2026-06 |
| Plant A Seed Foundation | 501(c)(3) | 2005 | $233,145 | $102,735 | 2026-06 |
| Vine House Inc | 501(c)(3) | 2017 | $178,414 | $611,063 | 2025-12 |
| Multiply 417 Inc | 501(c)(3) | 2020 | $114,956 | $31,915 | 2025-06 |
| Iglesia Bautista Libertad | 501(c)(3) | 2020 | $89,393 | $1 | 2024-12 |
| European Christian Radio Project Inc | 501(c)(3) | 2004 | $76,230 | $68,846 | 2025-12 |
| Advancing Vibrant Communities Inc | 501(c)(3) | 2002 | $55,671 | $23,034 | 2024-12 |
| Mark Stephen Gallo Memorial Fund | 501(c)(3) | 1978 | $50,459 | $714,750 | 2025-05 |
| Tabernaculo Biblico Apostolico | 501(c)(3) | 2021 | $47,372 | $22,059 | 2025-12 |
| Kairos Global Missions | 501(c)(3) | 2014 | $44,609 | $133,647 | 2024-12 |
| Phuoc Son Buddhist Center | 501(c)(3) | 2015 | $15,798 | $216,156 | 2025-12 |
| Venturechurch VC | 501(c)(3) | 2022 | $3,709 | $1,422 | 2023-12 |
| Rhema Ministry | 501(c)(3) | 2014 | $1,050 | $1,162 | 2024-12 |
| Alex Meadows Ministries Inc | 501(c)(3) | 2019 | $0 | $0 | 2025-12 |
| Anima Christi Missionaries of Conso Lation Inc | 501(c)(3) | 2026 | | | |
| Arabic Christian Church of Modesto | 501(c)(3) | 2012 | | | |
| Arete Ministries Inc | 501(c)(3) | 2026 | $0 | $0 | 2025-09 |
| Bais Hilel | 501(c)(3) | 2022 | | | |
| Beacon of Light International | 501(c)(3) | 2021 | $0 | $0 | 2023-12 |
| Believers Walk Ministries | 501(c)(3) | 2013 | $0 | $0 | 2025-12 |
| Bestowing Gods Word Inc | 501(c)(3) | 2024 | $0 | $0 | 2026-01 |
| Big Valley Grace Community Church & Big Valley Christian School | 501(c)(3) | 2013 | | | |
| Bodhisastra University Ca Corporation | 501(c)(3) | 2019 | $0 | $0 | 2024-12 |
| Bountiful Harvest Ministry Inc | 501(c)(3) | 2004 | $0 | $0 | 2025-12 |
| Bread of Life Ministries | 501(c)(3) | 2006 | | | |
| Bueno Ministries Inc | 501(c)(3) | 2022 | $0 | $0 | 2024-12 |
| Calvary Baptist Church Southern of Modesto | 501(c)(3) | 2018 | | | |
| Casa Mundial de Oracion Inc | 501(c)(3) | 2023 | | | |
| Casa de Favor Church | 501(c)(3) | 2024 | | | |
| Celebrate Christ Community Church | 501(c)(3) | 2022 | $0 | $0 | 2025-08 |
| Celebrations of Hope Inc | 501(c)(3) | 1996 | $0 | $0 | 2025-12 |
| Center for Spiritual Living Modesto | 501(c)(3) | 2014 | | | |
| Center of Hope Modesto Dream Center | 501(c)(3) | 2004 | | | |
| Central Baptist Church | 501(c)(3) | 2019 | | | |
| Central California Guild of the Catholic Medical Association | 501(c)(3) | 2019 | $0 | $1 | 2025-12 |
| Central Valley St Mary Ethiopian Or Thodox Tewahedo Church | 501(c)(3) | 2026 | | | |
| Centro Christiano Amistad | 501(c)(3) | 2010 | | | |
| Centro Cristiano Vino Nuevo | 501(c)(3) | 1998 | | | |
| Church of God Faithful Flock | 501(c)(3) | 2003 | | | |
| Church of God-Modesto | 501(c)(3) | 2002 | | | |
| Confraternidad Cristiana El Camino Inc | 501(c)(3) | 2025 | | | |
| Cristo Sin Fronteras | 501(c)(3) | 1996 | | | |
| Debre Haile Saint Rufael Ethiopian Orthodox Tewahedo Church | 501(c)(3) | 2022 | | | |
| Delhi Missionary Baptist Church | 501(c)(3) | 2001 | | | |
| El Buen Samaritano Ministries Inc | 501(c)(3) | 2019 | | | |
| El Nuevo Pactor Inc | 501(c)(3) | 2003 | | | |
| El Pueblo de Israel Vive Inc | 501(c)(3) | 2022 | | | |
| Emanuel Romanian Church | 501(c)(3) | 2012 | | | |
| Embabizi Uganda | 501(c)(3) | 2025 | $0 | $0 | 2025-12 |
| Faith Temple Missionary Baptist Church | 501(c)(3) | 1996 | | | |
| Families for Vocation and Healing Ministry | 501(c)(3) | 2013 | $0 | $0 | 2024-12 |
| Felons for Christ Ministries | 501(c)(3) | 2026 | | | |
| Firestarters Inc | 501(c)(3) | 2024 | $0 | $0 | 2025-12 |
| Five Fold Ministry Organization | 501(c)(3) | 2024 | | | |
| Fruit of the Spirit Ministries Inc | 501(c)(3) | 2019 | | | |
| Genesis World Faith Center | 501(c)(3) | 2004 | | | |
| Glen Berteau Ministries Inc | 501(c)(3) | 2000 | | | |
| Gods Door Keepers | 501(c)(3) | 1998 | | | |
| Good Life Ministries Inc | 501(c)(3) | 2022 | | | |
| Good News Seminary Inc | 501(c)(3) | 2024 | $0 | $0 | 2025-12 |
| Grace Worship Center | 501(c)(3) | 2002 | | | |
| Graceisthekey | 501(c)(3) | 2017 | $0 | $0 | 2025-12 |
| Graceradio | 501(c)(3) | 2020 | $0 | $0 | 2025-12 |
| Greater Modesto Ministerial Association | 501(c)(3) | 1997 | $0 | $0 | 2023-08 |
| Greater True Light Baptist Church of Modesto | 501(c)(3) | 2004 | | | |
| Greek Orthodox Church of the Annunciation | 501(c)(3) | 2022 | | | |
| Gurdwara Be-Gumpura Guru Nanaksar S | 501(c)(3) | 2015 | | | |
| He Calls Me His Own Ministry | 501(c)(3) | 2026 | | | |
| Heart of the Valley Christian Church | 501(c)(3) | 2002 | | | |
| Hope of Christ Ministry | 501(c)(3) | 2026 | | | |
| House San Diego | 501(c)(3) | 2018 | | | |
| I Believe Church Inc | 501(c)(3) | 2019 | | | |
| Iglesia Apostolica Refugio de Amor | 501(c)(3) | 2022 | | | |
| Iglesia Apostolica Roca Fuerte | 501(c)(3) | 2013 | | | |
| Iglesia Apostolica de Un Solo Dios | 501(c)(3) | 2025 | | | |
| Iglesia Del Senor Jesucristo Nueva Esperanza Inc | 501(c)(3) | 2024 | | | |
| Iglesia Evangelica Profetica Peniel | 501(c)(3) | 2003 | | | |
| Iglesia Jesus Rey de Reyes | 501(c)(3) | 2026 | | | |
| Iglesia Pentecostes La Tribu de Juda | 501(c)(3) | 2023 | | | |
| Iglesia Pentecostes Shekhinah Y Fuego Inc | 501(c)(3) | 2025 | | | |
| Iglesia de Cristo Ebenezer Modesto | 501(c)(3) | 2008 | | | |
| Ignite My City Church Outreach | 501(c)(3) | 2026 | | | |
| Immanuel Masih Outreach | 501(c)(3) | 2016 | | | |
| Insight Meditation Central Valley | 501(c)(3) | 2014 | | | |
| Intl Bible Church | 501(c)(3) | 2023 | | | |
| Jesus Our Savior Anglican Church | 501(c)(3) | 2014 | | | |
| Journey Christian Church of the Central Valley Inc | 501(c)(3) | 2013 | | | |
| Korean United Church of Modesto | 501(c)(3) | 2000 | | | |
| Life Spirit Fire Ministries | 501(c)(3) | 2011 | $0 | $0 | 2025-12 |
| Limitless Ministries Inc | 501(c)(3) | 2022 | | | |
| Lions Pride Running Club Inc | 501(c)(3) | 2019 | $0 | $147 | 2025-12 |
| Little Mule Ministries | 501(c)(3) | 1999 | $0 | $0 | 2025-12 |
| Living Water Christian Church | 501(c)(3) | 2015 | | | |
| Love International San Francisco | 501(c)(3) | 2021 | | | |
| Maranatha Pentecostal Romanian Church | 501(c)(3) | 2019 | | | |
| Media 7 Ministries | 501(c)(3) | 1999 | $0 | $0 | 2025-12 |
| Ministerios Maranatha Fuego Y Poder Inc | 501(c)(3) | 2019 | | | |
| Ministries New Covenant | 501(c)(3) | 2018 | $0 | $0 | 2025-12 |
| Ministry of Christ | 501(c)(3) | 2013 | | | |
| Modesto Bhajan Mandali | 501(c)(3) | 2014 | $0 | $0 | 2025-12 |
| Modesto Chinese Christian Church Inc | 501(c)(3) | 2019 | | | |
| Modesto Peoples Christian Fellowship | 501(c)(3) | 1998 | | | |
| New Bethany Missionary Baptist Church of Modesto | 501(c)(3) | 2002 | | | |
| New Jerusalem International Ministries | 501(c)(3) | 2014 | $0 | $0 | 2025-12 |
| Open Hands Christian Counseling | 501(c)(3) | 2025 | $0 | $0 | 2025-12 |
| Pentecostal Faith Ministries | 501(c)(3) | 1998 | | | |
| Peoples Church of Modesto Inc | 501(c)(3) | 2009 | | | |
| Press Pause Ministries Inc | 501(c)(3) | 2015 | $0 | $0 | 2025-12 |
| Progressive Missionary Baptist Church | 501(c)(3) | 2016 | | | |
| RMW Ministries Inc | 501(c)(3) | 2014 | | | |
| Ram Krishna Kalyan Foundation | 501(c)(3) | 2025 | | | |
| Regeneration Church | 501(c)(3) | 2023 | | | |
| Remnant Church Modesto Inc | 501(c)(3) | 2004 | | | |
| Renew Church Modesto | 501(c)(3) | 2015 | | | |
| Replenish the Table Charity | 501(c)(3) | 2025 | $0 | $0 | 2025-12 |
| Revival Strategies International Inc | 501(c)(3) | 1998 | $0 | $0 | 2025-12 |
| Rosemary & Sage Healing-Center for Love & Vibration Inc | 501(c)(3) | 2026 | | | |
| Sangharam Monastery | 501(c)(3) | 2004 | | | |
| Saraswati Mohini Ramayan Mandali | 501(c)(3) | 2003 | | | |
| Second Baptist Church | 501(c)(3) | 2007 | | | |
| Seed of Joy Ministries Inc | 501(c)(3) | 2014 | | | |
| Serra International | 501(c)(3) | 2020 | $0 | $0 | 2026-05 |
| Shelter Cove Community Church Inc | 501(c)(3) | 2001 | | | 2010-12 |
| Shiu Bhawan Sarawati Ramayan Bhajan Mandali | 501(c)(3) | 2006 | | | |
| Shree Sat Sanathan Dharm Purohit Braham Maha Sabha of California | 501(c)(3) | 2014 | | | |
| Sikh Community Center | 501(c)(3) | 2022 | $0 | $0 | 2025-12 |
| Slice of Heaven Ministries Incorporated | 501(c)(3) | 2016 | $0 | $0 | 2024-12 |
| Soul Harvest Worship Center Inc | 501(c)(3) | 2008 | | | |
| St James Antiochian Orthodox Church | 501(c)(3) | 2003 | | | |
| St Johns Place of Grace Inc | 501(c)(3) | 2025 | | | |
| St Mark Coptic Orthodox Church | 501(c)(3) | 1997 | | | |
| Stanislaus Communities Chaplaincy Association | 501(c)(3) | 2003 | $0 | $0 | 2025-12 |
| Stanislaus Open Door Ministry | 501(c)(3) | 2025 | $0 | $0 | 2025-12 |
| Stanislaus Redeemer Church | 501(c)(3) | 2017 | | | |
| Sunrise Christian | 501(c)(3) | 2026 | | | |
| THFW Inc | 501(c)(3) | 2018 | | | |
| Templo El Buen Samaritano Asambleas de Dios Ebs | 501(c)(3) | 2021 | | | |
| The Holy Apostolic Catholic Assyria Church of the East-Diocese of Ca | 501(c)(3) | 1999 | | | 2024-12 |
| The House Argyle | 501(c)(3) | 2018 | | | |
| The House Modesto | 501(c)(3) | 2018 | | | |
| The Rector Wardens & Vestry of | 501(c)(3) | 2009 | | | |
| The Well Community Fellowship of Modesto | 501(c)(3) | 2007 | | | |
| Three Rivers Christian Fellowship Inc | 501(c)(3) | 2001 | | | |
| Thru the Bible Inc | 501(c)(3) | 2019 | $0 | $0 | 2025-12 |
| Transicion | 501(c)(3) | 2025 | $0 | $0 | 2025-06 |
| Via Delarosa Congregational Christian Church | 501(c)(3) | 1951 | | | |
| Victory Outreach-Modesto Spanish | 501(c)(3) | 2002 | | | |
| Victory in Praise | 501(c)(3) | 2004 | | | |
| Village Christian Fellowship | 501(c)(3) | 2010 | | | |
| Vineyard Christian Fellowship of Modesto Inc | 501(c)(3) | 2018 | | | |
| Wat Tepnimit | 501(c)(3) | 2014 | | | |
| Wellspring Anglican Church | 501(c)(3) | 2009 | | | |
| Wellspring Foundation of Stanislaus | 501(c)(3) | 2005 | | | |
| What Would Jesus Do Ministries Inc | 501(c)(3) | 2011 | | | |