| Baja Bound Ministries Inc | 501(c)(3) | 1998 | $2.5 million | $249,514 | 2025-12 |
| Gloria World Mission | 501(c)(3) | 1999 | $537,510 | $969,473 | 2025-12 |
| Revival & Kingdom Ministries Inc | 501(c)(3) | 2016 | $481,924 | $6,634 | 2024-12 |
| Calvary Global Network | 501(c)(3) | 2023 | $392,754 | $76,947 | 2022-12 |
| Horizonte Ministries | 501(c)(3) | 2000 | $360,615 | $110,061 | 2024-12 |
| New Creation Communities | 501(c)(3) | 2015 | $338,603 | $104,859 | 2025-12 |
| Monte Maria Media Religious Corporation | 501(c)(3) | 2009 | $240,881 | $23,368 | 2025-06 |
| Raised 2 Walk Inc | 501(c)(3) | 2007 | $204,813 | $118,120 | 2024-12 |
| Heart Revolution | 501(c)(3) | 2019 | $163,849 | $30,931 | 2024-12 |
| Rock Builders Christian Ministries | 501(c)(3) | 2004 | $137,009 | $256,665 | 2024-12 |
| Manantial de Vida Parroquia Cristiana Inc | 501(c)(3) | 2017 | $124,920 | $26,675 | 2019-12 |
| Religious of the Incarnate Word | 501(c)(3) | 1985 | $118,287 | $284,146 | 2025-06 |
| Our Fathers House of Worship Inc | 501(c)(3) | 2012 | $110,643 | $117,386 | 2025-12 |
| Koinonia Ministries Inc | 501(c)(3) | 2015 | $90,961 | $12,492 | 2025-12 |
| Code 7 | 501(c)(3) | 2024 | $75,045 | $12,903 | 2025-12 |
| Field Christian Community Church | 501(c)(3) | 2019 | $69,979 | $14,239 | 2017-12 |
| As of First Importance Ministries | 501(c)(3) | 2023 | $66,703 | $28,173 | 2025-12 |
| Hombre Nuevo San Diego Inc | 501(c)(3) | 2014 | $42,025 | $26,522 | 2023-12 |
| Iglesia Bautista Hispana de San Diego | 501(c)(3) | 2022 | $28,990 | $32,764 | 2025-12 |
| Church of the Solid Rock Corp | 501(c)(3) | 2021 | $5,094 | $5,094 | 2022-12 |
| Souls of Jesus Ministries Inc | 501(c)(3) | 2023 | $3,900 | $1,276 | 2025-12 |
| Miraculous Ministry of Jesus Charit Ies Incorporated | 501(c)(3) | 2025 | $2,066 | $1,257 | 2025-12 |
| Region VII of the International Order of St Luke the Physician | 501(c)(3) | 2018 | $700 | $0 | 2025-12 |
| Abundant Life Christian Worship Center of San Diego | 501(c)(3) | 2004 | | | |
| All Peoples Church Gateway To the Americas | 501(c)(3) | 2024 | | | |
| Amazing Grace Christian Fellowship | 501(c)(3) | 2008 | | | |
| Amistad Chula Vista | 501(c)(3) | 2003 | | | |
| Amistad Familiar Del Valle Imperial -International Ministries | 501(c)(3) | 2006 | | | |
| Aposento Alto Internacional Inc | 501(c)(3) | 2020 | | | |
| Areumdaun Church | 501(c)(3) | 1972 | | | |
| Bayview Orthodox Presbyterian Church | 501(c)(3) | 2026 | | | |
| Berean Bible Baptist Church | 501(c)(3) | 2001 | | | |
| Beyond Borders | 501(c)(3) | 2018 | $0 | $0 | 2025-12 |
| Bonita Road Baptist Church | 501(c)(3) | 2015 | | | |
| Call of Zion | 501(c)(3) | 2014 | | | |
| Calvary Chapel San Diego Espanol | 501(c)(3) | 2022 | | | |
| Calvary Fellowship Imperial Beach | 501(c)(3) | 2000 | | | |
| Casting Nets Ministry | 501(c)(3) | 2022 | $0 | $0 | 2024-12 |
| Center for Hundredfold Living | 501(c)(3) | 2016 | $0 | $0 | 2026-06 |
| Centro Cristiano Abba Padre | 501(c)(3) | 2022 | | | |
| Centro Cristiano El Shadai | 501(c)(3) | 2001 | | | |
| Centro Cristiano Internacional Cedros Del Sinai Hombres Y Mujeres | 501(c)(3) | 2013 | | | |
| Centro Gracia Inc | 501(c)(3) | 2024 | | | |
| Centro de Armonia Familiar | 501(c)(3) | 2003 | | | |
| Chabad of Chula Vista | 501(c)(3) | 2016 | | | |
| Chazown Inc | 501(c)(3) | 2012 | | | |
| Christ Is the Answer Ministries Inc | 501(c)(3) | 2018 | $0 | $0 | 2025-12 |
| Christ Living Stone Chrisitanfellowship and Ministries Inc | 501(c)(3) | 2007 | | | |
| Christ the Savior Church | 501(c)(3) | 2024 | | | |
| Christian Life Urban Preparatory Academy Inc | 501(c)(3) | 2025 | $0 | $0 | 2025-12 |
| Christian Service Training Institute | 501(c)(3) | 2022 | $0 | $0 | 2025-12 |
| Chula Vista Chinese Bible Church | 501(c)(3) | 2017 | | | |
| Chula Vista Korean Presbyterian Church | 501(c)(3) | 2013 | | | |
| Church in Chula Vista | 501(c)(3) | 2016 | | | 2023-12 |
| Cima Vida Nueva | 501(c)(3) | 2017 | | | |
| City Christian Center Inc | 501(c)(3) | 2007 | | | |
| City Lights Church Inc | 501(c)(3) | 2021 | | | |
| Comunidad Cristiana Bajo Sus Alas | 501(c)(3) | 2013 | | | |
| Comunidad Cristiana Monte Horeb | 501(c)(3) | 2012 | | | |
| Comunidad Rey de Gloria USA Inc | 501(c)(3) | 2026 | | | |
| Country Church Full Gospel | 501(c)(3) | 1959 | | | |
| Crecimiento Familiar Torre Fuerte Inc | 501(c)(3) | 2020 | | | |
| Cristianos Unidos Para Servir | 501(c)(3) | 2016 | $0 | $0 | 2025-12 |
| Divine Word Internatinnal Christian Ministries Inc | 501(c)(3) | 1997 | | | |
| Eastlake Community Church of Chula Vista Ca | 501(c)(3) | 2008 | | | 2006-12 |
| Empowerment Ministry - Em | 501(c)(3) | 2024 | $0 | $0 | 2025-12 |
| Epicenter Church | 501(c)(3) | 2025 | $0 | $0 | 2025-12 |
| Equipo de Jesus El Cristo Ejercito de Dios | 501(c)(3) | 2024 | | | |
| Explore Community Church | 501(c)(3) | 2014 | | | |
| Faithful and Wise Steward | 501(c)(3) | 2024 | | $461,541 | 2025-12 |
| Family Resources Center San Diego | 501(c)(3) | 2025 | $0 | $0 | 2025-12 |
| Family Revival Church San Diego Inc | 501(c)(3) | 2021 | | | |
| Fir2gm Limited | 501(c)(3) | 2024 | $0 | $719 | 2025-12 |
| First Pentecostal Church of God Our Lord Jesus Christ Inc | 501(c)(3) | 2019 | | | |
| Foundation VCD | 501(c)(3) | 2022 | $0 | $0 | 2025-11 |
| Friends of Calvary Chapel Bible College Peru | 501(c)(3) | 2004 | | | |
| Fruit of the Vine Christian Center Chula Vista Inc | 501(c)(3) | 2014 | | | |
| Fully Persuaded Church | 501(c)(3) | 1995 | | | |
| Global Harvest Church Inc | 501(c)(3) | 2003 | | | |
| Gospel Church Inc | 501(c)(3) | 2021 | $0 | $0 | 2025-12 |
| Greater Life South | 501(c)(3) | 2025 | | | |
| Grounded Community Church | 501(c)(3) | 2018 | | | |
| Heart of God Church of Deliverance Outreach International | 501(c)(3) | 2014 | | | |
| Henry Page Ministries Incorporated | 501(c)(3) | 2000 | | | |
| Hilltop Pentecostal Tabernacle | 501(c)(3) | 2009 | | | |
| House of Healing for All Nations | 501(c)(3) | 2026 | $0 | $0 | 2025-12 |
| Iglesia Bautista El Calvario | 501(c)(3) | 2006 | | | |
| Iglesia Bautista Emanuel Dios Con Nosotros | 501(c)(3) | 2001 | | | |
| Iglesia Cristiana Amor Y Esperanza | 501(c)(3) | 2018 | | | |
| Iglesia Ministerios Ciudad de Refugio | 501(c)(3) | 2012 | | | |
| Iglesia Ministerios de Vida | 501(c)(3) | 2018 | | | |
| Iglesia Nueva Generacion de Jesus Inc | 501(c)(3) | 2011 | | | |
| Iglesia de Cristo Ministerios Elim Chula Vista | 501(c)(3) | 2010 | | | |
| Iglesia de Cristo de Chula Vista | 501(c)(3) | 2012 | | | |
| Iglesia de Nuestro Padre Inc | 501(c)(3) | 2012 | | | |
| Ilumina Ministries Inc | 501(c)(3) | 2025 | $0 | $0 | 2025-12 |
| Impact Church San Diego Inc | 501(c)(3) | 2020 | | | |
| International Church of Praise | 501(c)(3) | 2003 | | | |
| Jesus Church San Diego | 501(c)(3) | 2024 | | | |
| Jim Guinn Ministries | 501(c)(3) | 2025 | $0 | $0 | 2025-12 |
| Juan 316 Ministries Inc | 501(c)(3) | 2020 | | | |
| Kingdom Choice International Ministries | 501(c)(3) | 2014 | | | |
| Kooks for Christ | 501(c)(3) | 2024 | $0 | $0 | 2024-12 |
| La Roca Christian Communities Inter National Inc | 501(c)(3) | 2026 | | | |
| La Roca Comunidad Cristiana Inc | 501(c)(3) | 2003 | | | |
| Libres Para Servir San Diego Inc | 501(c)(3) | 2015 | | | |
| Life Changers Ministries San Diego | 501(c)(3) | 2015 | | | |
| Life Christian Center International Ministries of San Diego | 501(c)(3) | 2002 | | | |
| Lighthouse Church International of San Diego | 501(c)(3) | 2020 | | | |
| Lighthouse Ministries of San Diego | 501(c)(3) | 2014 | | | |
| Local Church of San Diego Inc | 501(c)(3) | 2022 | | | |
| Love Bridge Ministry | 501(c)(3) | 2023 | $0 | $0 | 2025-12 |
| Love Church | 501(c)(3) | 2024 | | | |
| Luminous City | 501(c)(3) | 2019 | | | |
| Make It Plain Productions Inc | 501(c)(3) | 2006 | | | 2008-12 |
| Mater Dei Catholic Parish in Chula Vista Ca Real Prop Support Corp | 501(c)(3) | 2019 | | | |
| Mi Pasion Es Servir Ministries Inc | 501(c)(3) | 2025 | | | |
| Ministerio Eben-Ezer | 501(c)(3) | 2011 | | | |
| Ministerios Roca Eterna | 501(c)(3) | 2009 | | | |
| Ministerios Vina Inc | 501(c)(3) | 2013 | | | |
| Ministerios de Amistad Inc | 501(c)(3) | 2003 | $0 | $0 | 2020-12 |
| Mision Carismatica Internacional | 501(c)(3) | 2015 | | | |
| Missinn Nuestra Senora de Los Angeles | 501(c)(3) | 2025 | | | |
| Momentum Christian Church | 501(c)(3) | 2008 | | | |
| Monarch Ministry | 501(c)(3) | 2023 | $0 | $0 | 2024-12 |
| Most Precious Blood Catholic Parish in Chula Vista Ca Real Property | 501(c)(3) | 2019 | | | |
| Nacidos Para Bendecir A Las Naciones Inc | 501(c)(3) | 2023 | | | |
| New Beginnings Eastlake | 501(c)(3) | 2014 | | | |
| New Destiny Church San Diego | 501(c)(3) | 2025 | | | |
| New Generation Worship Corp | 501(c)(3) | 2012 | | | |
| New Inspiration Church Inc | 501(c)(3) | 2014 | | | |
| New Jerusalem Church | 501(c)(3) | 2013 | | | |
| New Life International South Bay Christian Church Inc | 501(c)(3) | 2002 | | | |
| Nueva Generacion Inc | 501(c)(3) | 2022 | $0 | $0 | 2025-12 |
| Nueva Vid Ministries Inc | 501(c)(3) | 2010 | | | |
| Open Gate Zen Collective | 501(c)(3) | 2022 | | | |
| Open Heaven Christian Fellowship | 501(c)(3) | 2019 | | | |
| Our Lady of Guadalupe Catholic Parish in Chula Vista Ca Real Prop | 501(c)(3) | 2019 | | | |
| Perfecting Grace International Ministries Inc | 501(c)(3) | 2018 | | | |
| Re-Entry Prison and Jail Ministry | 501(c)(3) | 1996 | $0 | $0 | 2026-02 |
| Reach International for Christ Inc | 501(c)(3) | 2009 | $0 | $0 | 2025-12 |
| Rejoice Fellowship San Diego Inc | 501(c)(3) | 2010 | | | |
| Restored Church South Bay | 501(c)(3) | 2018 | | | |
| Retrouvaille de Fresno En Espanol | 501(c)(3) | 2017 | $0 | $0 | 2024-12 |
| Riverlife Church | 501(c)(3) | 2025 | | | |
| Saint Pius X Catholic Parish in Chula Vista Ca Real Prop Support C | 501(c)(3) | 2019 | | | |
| Saint Rose of Lima Catholic Parish in Chula Vista Ca Real Prop Suppor | 501(c)(3) | 2019 | | | |
| San Diego Wolves Baseball Club | 501(c)(3) | 2018 | $0 | $0 | 2026-06 |
| San Miguel Cummunity Church | 501(c)(3) | 2007 | | | |
| Scarlet Strings Ministry | 501(c)(3) | 2026 | | | |
| South Point Church | 501(c)(3) | 2016 | | | |
| St Gabriel Independent Ethiopian Orthodox Tewahedo Church of SD Inc | 501(c)(3) | 1998 | | | |
| Templo de Alabanza de Chula Vista Inc | 501(c)(3) | 2022 | | | |
| The Revolution Church San Diego | 501(c)(3) | 2002 | | | |
| The Secret Place Deliverance & Healing Ministries | 501(c)(3) | 2018 | $0 | $0 | 2022-05 |
| The Vinzonian International Inc | 501(c)(3) | 2014 | $0 | $0 | 2024-12 |
| Tiempo Perfecto Inc | 501(c)(3) | 2015 | $0 | $0 | 2024-12 |
| Troops of St George Southbay Chula Vista | 501(c)(3) | 2025 | | | |
| Vertical Church San Diego | 501(c)(3) | 2024 | | | |
| Vida Para Las Naciones San Diego | 501(c)(3) | 2019 | | | |
| Way Christian Church | 501(c)(3) | 2004 | | | |
| Youth With A Mission San Diego-Baja | 501(c)(3) | 1994 | | | |